Internationally Funded Projects:
- Processing-in-memory architectures and programming libraries for bioinformatics
Sponsored by the European Innovation Council. - Spatio-Temporal Gene Discovery for Autism Spectrum Disorder.
Sponsored by Simons Foundation. - Visual analysis of microservices-based cloud environments.
Sponsored by Cyber ARMO Ltd, Israel. - Speeding up autism gene discovery via multitask learning on comorbid neuropsychiatric disorders.
Sponsored by Simons Foundation - A High-Level Design Methodology for Developing Graph Algorithms on Xeon + FPGA Platforms.
Sponsored by Intel Corporation - CUDA Research Center (CRC).
Sponsored by NVIDIA - Using Accelerator Technologies in Graph Parallel Applications
Sponsored by Intel Corp. - Elastic and transparent scaling for stream processing applications
Sponsored by European Commission, Marie Curie Actions - Development and application of computational methods to analyze next generation sequence data
Sponsored by European Molecular Biology Organization - Novel algorithms and hardware designs for ultra-fast next-gen sequence analysis
Sponsored by United States of America National Institutes of Health - Integrated approaches for genomic variation discovery using high throughput sequencing
Sponsored by European Commission, Marie Curie Actions - FIRESENSE: Fire Detection and Management through a Multi-Sensor Network for the Protection of Cultural Heritage Areas from the Risk of Fire and Extreme Weather Conditions
Sponsored by European Commission, 7th Framework Programme - Heterogeneous Chip Multiprocessor Design (HTCMP)
Sponsored by European Commission FP7-People Marie Curie Actions - Training, Research and Innovations in Computing Education
Sponsored by Lifelong Learning Programme of the European Commission - Parallelizing for IBM Cell, Sponsored by HPC-Europa2
- 3DPHONE
Sponsored by European Commission, 7th Framework Programme - NEWCOM++ (Network of Excellence in Wireless Communications++)
Sponsored by European Commission, 7th Framework Programme - Automatic Detection and Segmentation of Hazelnut Orchards in Northern Turkey
Sponsored by European Commission, Joint Research Centre - Automatic Mapping of Linear Woody Vegetation Features in Agricultural Landscapes
Sponsored by European Commission, Joint Research Centre - CILL: Constrained Intuitionistic Linear Logic
Sponsored by European Commission FP6 Marie Curie Actions - Wireless Networking Curriculum Enhancement
Sponsored by Intel Higher Education Program - Hierarchical Classification, Mining and Semantic Retrieval in Remote Sensing Image Archives
Sponsored by European Commission FP6 Marie Curie Actions - MUSCLE-Multimedia Understanding, Through Semantics, Computation, and Learning
Sponsored by The European Community Sixth Framework Programme (FP6) - 3DTV-Integrated 3-D Television: Capture, Transmission and Display
Sponsored by The European Community Sixth Framework Programme (FP6) - South Eastern GRid Enabled eInfrastructure Development
Sponsored by TheEuropean Community Sixth Framework Programme (FP6) - Ad Hoc and Sensor Networks
Sponsored by The European Community Sixth Framework Programme (FP6) - European Thematic Network for Doctoral Education in Computing
Sponsored by Socrates Erasmus Programme of the European Commission - Utilizing Heterogeneous CMPs through Efficient Parallelization, Sponsored by IBM Corporation
- Network Middleware for Environmental Monitoring and Control with Wireless Ad hoc, Mesh and Sensor Networks, Sponsored by IBM Corporation
- A Tool for Visually Handicapped People
Sponsored by Microsoft Research Ltd., Cambridge, UK. - Kronecker Operations to Define Large Markov Chains Underlying Structured Representations
Sponsored by AvH (Alexander von Humboldt) Foundation, Germany - Complexity Management Techniques in Graph Visualization
Sponsored by Tom Sawyer Software, Berkeley, CA. - Turkish Natural Language Processing Initiative
Sponsored by NATO Science for Stability Program. - Unstructured Domain Mapping for Distributed Memory Architectures
Sponsored by Commission of the European Communities. - Time-Cognizant Trigger Processing In Mobile Distributed Systems
Sponsored by NATO Collaborative Research Grant Program.
Jointly Sponsored Projects:
- Detecting and preventing fraud in financial transaction networks through graph based modeling, querying, and visualization. Sponsored by TÜBITAK (Scientific and Technological Research Council of Turkey) and Turkcell Technology.
- BacGenTrack – An integrated system for Bacterial Genome Tracking using high throughput sequencing technology: from identification to visualization. (115E596)
Sponsored by TÜBITAK (Scientific and Technological Research Council of Turkey) and FCT (The Foundation of Science and Technology, Portugal) - Big graph visualization and analysis using advanced querying, fast layout and complexity management techniques (5180088). Sponsored by TÜBITAK (Scientific and Technological Research Council of Turkey) and Huawei.
- Energy efficient FPGA accelerators for graph analytics, Sponsored by European Commission (H2020-MSCA-IF) and in collaboration with Intel Corp.
- Heterogenous parallel and distributed computing with Java (HPDCJ)
Sponsored by CHIST-ERA (European Coordinated Research on Long-term Challenges in Information and Communication Sciences & Technologies) - Leonardo Mobility Project
Sponsored by European Union Leonardo Program and State Planning Organization of Turkey - Semantic Multimodal Analysis of Digital Media
Sponsored by TÜBITAK (Scientific and Technical Research Council of Turkey) and European Commission COST 292 Action - Data Mining Techniques for the Location and Air-Cache management Problems
Sponsored by TÜBITAK (Scientific and Technical Research Council of Turkey) and GSRT (The General Secretariat for Research and Technology of Greece). - Storing and Querying Multimedia Presentations from XML Documents
Sponsored by TÜBITAK (Scientific and Technical Research Council of Turkey) and NSF (National Science Foundation). - New Methods for Large State Spaces in Performance Evaluation with Markovian Modeling – II
Sponsored by TÜBITAK (Scientific and Technical Research Council of Turkey) and CNRS (Center National de la Recherche Scientifique of France). - New Methods for Large State Spaces in Performance Evaluation with Markovian Modeling – I.
Sponsored by TÜBITAK (Scientific and Technical Research Council of Turkey) and CNRS (Center National de la Recherche Scientifique of France).
Projects sponsored by TÜBİTAK (Scientific and Technical Research Council of Turkey):
- A System and Tool to Find, Assess and Eliminate Process Smells in software Engineering (5200078)
- Investigation and Modeling of Audio-Visual Hereditary Patterns of Speech, and Their Use in Kinship Verification (118C015)
- Applying Information Retrieval Paradigms in Natural Language to SQL Translation (118E724)
- Energy efficient processor architectures for big data graph applications
- Efficient Layout Algorithms for Compound Graphs With Support for Ports and Constraints (118E131)
- Processor Design for Graph Applications
- Rendering Three-Dimensional Scenes with Tetrahedral Meshes (117E881)
- Weakly Supervised Learning and Content-Based Retrieval for Whole Slide Breast Histopathology (117E172)
- Software and Hardware Solutions for Safety Critical Applications (117E870)
- Online Classification of Multi-Source Parallel Data Streams in Big Data Environments (117E870)
- DNA’nın 3 Boyutlu Yapısının Genetik Varyasyonların Otizm ile İlişkilendirilmesinde Kullanılması (116E148)
- Deep Learning for Histopathological Image Analysis (116E075)
- Wireless Network Topologies and Algorithms for Cloud Datacenters (116E028)
- Predicting Social Reaction and Its Labels for a Given News Article by Using Microblogs (215E169)
- Genom Çapında Yeniden İnşa Edilmiş Metabolik Ağları Barındıran Çevrimiçi Veritabanının Dizaynı ve Geliştirilmesi(115C128)
- Kolorektal Kanserin Nanomekanik Sistemlerle Erken Teşhisi Projesi (213E036)
- Algorithms for structural variation discovery using hybrid sequencing technologies and library preparation protocols. (215E172)
- Computer Vision and Machine Learning Techniques for Automated Classification of Whole-Slide Breast Histopathology Images (113E602)
- Hardware/Software Mechanisms to Enhance the Effectiveness of Directory Based Cache Coherence in Tiled Chip Multiprocessors (113E258)
- Methods and Tools for Effective Analysis of Biological Processes with SBGN (EEEAG 113E161)
- News Chain Discovery in News Articles (EEEAG 113E274)
- Efficient Resource Allocation in Heterogeneous Cloud Infrastructures (EEEAG 113E249)
- An Augmented Reality Environment for Interactive Crowd Simulation (EEEAG 112E110)
- Reliability-Aware Network on Chip (NoC) Architecture Design (112E360)
- Diverse Matching based Browsing in Large-scale Multi-dimensional Databases (EEEAG 111E217)
- Application-aware, system-level load management and shedding techniques for stream processing (112E271)
- Development and application of novel genome assembly algorithms that use multiple data sources (112E135)
- CHISIO: Querying, layout, and visualization of clustered or hierarchical relational information (111E036)
- Content-Based Retrieval of Histopathological Images using Relational Tissue Graphs (110E232)
- Refreshment Strategies for Query Result Caching in Web Search Engines (110E135)
- Mining of Very High Resolution Satellite Images Using Hierarchical Graph Models (109E193)
- Intelligent System Design for Automated Classification and Indexing of Cell Deaths in Cancerous Cell Cultures and Image based Anticancer Drug Screening Method Development (109E206)
- Novelty Detection in Topic Tracking for Turkish and its Application to a Large-Scale News Portal (108E074)
- Energy Efficient Application Mapping onto NoCs with Different Topologies (108E233)
- Exploiting Semantic Relationships for the Scalability and Efficiency of Web Search Engines (108E008)
- Biocomputational Cancer Modeling and Intelligent Medical Decision-Making System Design for Objective Cancer Diagnosis and Grading (CAREER Grant 106E118)
- Instant new event detection and tracking and retrospective event clustering in Turkish news using Web resources (106E014)
- State estimation and dynamic feedback behaviors for a legged robot (106E089)
- BTT-TÜRKIYE: Türkiye için Yeni Bilgi Toplumu Teknolojileri (105E065)
- Supporting Real-Time Traffic in Wireless Ad Hoc and Sensor Networks (CAREER Grant 104E028)
- Automatic Construction and Sophisticated Querying of Domain-Specific Web Search Engines (105E024)
- PATIKA: A Project on Modeling and Analysis of Biological Pathways to Aid Rapid Knowledge Acquisition, Drug Development and Disease Identification (CAREER Grant 104E049)
- Developing an Urban Visualization System for Virtual Environments using Computer Graphics (CAREER Grant 104E029)
- Probabilistic and Structural Approaches to Image Understanding, Classification and Retrieval, and Applications to Remote Sensing and Medical Image Analysis(CAREER Grant 104E074)
- Multimedia Data Mining: Integration of Multi-modal Data for a Better Retrieval and Analysis (CAREER Grant 104E065)
- Efficient Parallel Crawling of Web Content (103E028)
- Bluetooth Scatternet Construction and Bluetooth Applications (103E014)
- Development of Benefit Maximization and Interesting Rule Learning Algorithms for Feature Projection Based Classification Systems (101E044)
- Data Modelling and Querying for Video Databases (199E025)
- Polygonal Approximation Algorithms for Multiresolution Modeling (198E018)
- Continuous Function Approximation Using Feature Projections (198E015)
- Development of algorithms and parallel object-oriented programming techniques for SMP clusters (EEEAG-247)
- Real-Time Data Management in Mobile Computer Systems (EEEAG-246)
- Learning Translation Templates from Bilingual Translation Examples Using Machine Learning Techniques (EEEAG-244)
- Investigation of Numerical Solution Methods for Computing the Stationary Distribution of Markov Chains (EEEAG-161)
- Development of Batch Machine Learning Techniques for Multi-concept Descriptions in the form of Feature Partitioning and Overlapping Feature Intervals (EEEAG-153)
- Real-Time Database Transaction Scheduling (EEEAG-137)
Projects sponsored by Other National Companies and Foundations:
- Fast pathogen screening using DNA sequencing in disaster-stricken areas
Sponsored by Bridge to Türkiye, 2023-2025. - Developing rapid diagnostic kit for sepsis (Sepsi-Fast).
Sponsored by Afyon Health Sciences University, 2021-2022. - Processor Emulator for Safety Critical Applications,
Sponsored by Turkish Aviation Industries (TAI), 2017-2018. - Safe Computer Design.
Sponsored by ASELSAN, 2015-2017. - Utilizing Accelerator Technologies in the Cloud.
Sponsored by Turk Telekom, 2012-1013. - E-DEVLET Icin Bilgisayar Destekli Gorsel Dokumantasyon, Arsiv ve Yonetim Sistemi Gerceklestirilmesi (in Turkish),
Sponsored by Devlet Planlama Teskilati (YUUP: Yayginlastirilmis Ulusal ve Uluslararasi Proje) (E_DEVLET)